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Estimated 20,000 migratory birds have died so far in Klamath Basin botulism outbreak

Geese at Tule Lake National Wildlife Refuge in spring 2024.
Juliet Grable
/
JPR
Geese at Tule Lake National Wildlife Refuge in spring 2024.

Increased water allocation to the Klamath Basin wildlife refuges is helping mitigate a summer botulism outbreak that has resulted in the deaths of thousands of migratory birds.

On Aug. 17, the Bureau of Reclamation started flowing water to the Tule Lake and Lower Klamath National Wildlife Refuges to help mitigate an outbreak of avian botulism. Thousands of ducks, waterfowl, and shorebirds at the Tule Lake Refuge have died from the disease this month. Both refuges are part of the Klamath Basin Refuge Complex straddling the Oregon-California border near Klamath Falls.

Since the outbreak began in mid-August, refuge staff have been finding up to 500 dead birds per day in Sump 1A, the largest water body in the Tule Lake National Wildlife Refuge. John Vradenburg, supervisory biologist for the Klamath Basin Refuge Complex, estimates that about 20,000 birds have died so far, many of them ducks like pintails and green-winged teals.

The circulating water and increased volumes are helping prevent an even greater disaster, says Vradenburg, as sick and dead birds are concentrated in fewer areas.

鈥淲e are still seeing sick birds where the water is not moving, but some improvements where there is good flow and places where the water is getting deeper,鈥 says Vradenburg.

A rehab hospital to treat sick birds is being operated by the nonprofit Bird Ally X in partnership with Ducks Unlimited. The facility wasn鈥檛 operating earlier because refuge staff were awaiting test results on dead birds sent to the USGS National Wildlife Health Center in Madison, Wisconsin.

After dead grebes tested positive for Highly Pathogenic Avian Influenza in July, Vradenburg feared they were dealing with a dual outbreak of botulism and 鈥渂ird flu.鈥 They couldn鈥檛 risk treating birds possibly infected with HPAI in a confined area, since the virus can be transmitted to humans. So far, samples have only tested positive for botulism.

The botulism toxin is produced by a soil-borne bacterium and flourishes in warm, shallow and stagnant water.

Bureau of Reclamation
A map of the Klamath Basin with wildlife refuges.

The Bureau of Reclamation is responsible for allocating water to irrigators and to maintain levels in Upper Klamath Lake and flows on the Klamath River. In 2024, the refuges received more water than they have in recent drought years, drawing an abundance and diversity of birds not seen for decades. Reclamation was even able to send additional water to farms and the refuges to ensure safe conditions downstream while deconstruction of three dams downstream on the Klamath River took place.

In summer, as flows were curtailed and air temperatures rose, wetlands on the refuges drained and warmed. In July, tribes, waterfowl advocacy groups, and irrigators warned Reclamation that conditions were ripe for botulism to flourish and urged the agency to deliver water to the refuges. In August, after birds had begun dying at Tule Lake, 16 conservation groups, including many Audubon chapters, sent a letter urging the agency to release water to help mitigate the outbreak.

In a statement provided to 老夫子传媒, the U.S. Fish and Wildlife Service thanked Reclamation for directing water and acknowledged 鈥渟ustained inflow鈥 as 鈥渙ne of the most valuable tools for addressing a botulism outbreak in birds.鈥 In addition, the water flowing into Lower Klamath refuge has stabilized wetland levels there, giving rescuers a disease-free location to release birds that are treated in the rehab hospital.

Vradenburg remains hopeful this year鈥檚 botulism outbreak won鈥檛 be a reprise of 2020鈥檚 deadly event, when 60,000 ducks, geese, and other birds perished.

Karl Wenner, who co-owns Lakeside Farms adjacent Upper Klamath Lake, worries that with temperatures climbing back into the 90s this week, the outbreak could still 鈥渉it a crescendo.鈥

鈥淚 appreciate that Reclamation has released more water, and the farmers have done a fantastic job coming up with creative ways to get water to the refuges, but a little bit of water at this time is not enough,鈥 says Wenner. 鈥淭his is a systemic problem that requires more creative thinking and flexibility on everyone鈥檚 part to get this ecosystem back to functioning.鈥

Along with the short-term mitigating flows, the Bureau of Reclamation says it is 鈥渟upporting and engaging in a number of collaborative forums where Tribes, water managers and stakeholders are working together to develop a longer-term operational plan to meet multiple needs with limited water supplies.鈥

Among the strategies they are considering is flowing water from through and within the Klamath Project, the irrigation system that supplies water to farmers as well as the Tule Lake and Lower Klamath refuges.

Mark Hennelly, vice president of advocacy at California Waterfowl Association, says that flowing water from Upper Klamath Lake, through the farms and refuges and back to the Klamath River would improve water quality in the river and create permanent and semi-permanent wetland habitat that mimics how the Klamath Basin used to function naturally, before the massive irrigation project remade it. These wetlands could also be used to support struggling populations of endangered suckers (c鈥檞aam and koptu), says Hennelly.

鈥淚f we could get more water to the refuges, but do it in a way that we help endangered fish, that would be ideal,鈥 says Hennelly. 鈥淐ertainly too if we can create more reliability for the farmers.鈥

With so many demands on a limited water supply, such a solution requires more study, along with funding. Some of that funding could come from the state.

In November, California voters will weigh in on Proposition 4, The Safe Drinking Water, Wildfire Prevention, Drought Preparedness, and Clean Air Bond Act of 2024. If passed, it would authorize $10 billion in funding for 鈥渆nvironmental and climate projects,鈥 including $25 million for the Klamath refuges.

Hennelly would also like to see the updated Biological Opinions 鈥 documents that guide environmental decision making in the area for threatened coho salmon and endangered suckers 鈥 address the needs of the refuges and their importance to birds.

鈥淲e鈥檝e got to get past single species management and look more towards an ecosystem-based approach,鈥 says Hennelly. 鈥淭hat鈥檚 what鈥檚 going to have more consensus with the stakeholders and benefit multiple species.鈥

Clarification: This story has been updated to say Bird Ally X, in partnership with Ducks Unlimited, operates a rehab hospital in response to the botulism outbreak. It was also updated to reference a letter sent by conservation groups about concerns about the outbreak.

Juliet Grable is a writer based in Southern Oregon and a regular contributor to JPR News. She writes about wild places and wild creatures, rural communities, and the built environment.